Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs2292318 chr16:67985706 C/T 2.37E-5 288 20.63 29.57 16.4 KM Plot
CESC rs2293926 chr8:144398396 C/T 5.5E-5 294 26.63 21.2 16.63 KM Plot
CESC rs2404341 chr3:161092405 T/C 1.73E-6 287 22.4 20.13 19.2 KM Plot
CESC rs2404342 chr3:161092562 C/T 2.72E-6 288 21.97 20.13 19.73 KM Plot
CESC rs2436472 chr19:11388878 A/T 7.41E-5 288 17.02 23.97 21.2 KM Plot
CESC rs2436473 chr19:11388879 A/C 7.41E-5 288 17.02 23.97 21.2 KM Plot
CESC rs2467581 chr17:72892380 A/G 1.85E-5 295 16.87 27.63 21.2 KM Plot
CESC rs2499855 chr1:161929761 C/T 2.47E-5 298 8.43 26.37 20.73 KM Plot
CESC rs2638078 chr17:72892493 A/G 2.46E-5 295 15.33 27.77 21.2 KM Plot
CESC rs2657363 chr7:158684273 C/T 2.55E-12 292 21.2 22.83 0.6 KM Plot
CESC rs2683275 chr17:72887339 T/C 2.69E-5 296 15.33 28.3 21.17 KM Plot
CESC rs2795463 chr1:232932567 A/G 6.09E-10 299 4.4 31.7 21.2 KM Plot
CESC rs2796037 chr9:115511826 C/T 2.3E-6 295 21.4 21.5 10.02 KM Plot
CESC rs28373202 chr9:136264155 G/A 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs28384439 chr19:9731965 G/A 3.72E-14 290 22.4 19.83 3.33 KM Plot